Suggestions (I may add others' suggestions to the list if people find this thread valuable):
-If you have to use chat to sent data, use obscure channels, multiple dummy calls, and hashed messages.
-Try to avoid, however, using chat, as there is always the possibility of its being intercepted or decoded. Whenever possible, use link messages, or if time is irrelevant, even email.
-If you want some parts of your scripts to be modifiable, but want to keep other parts a secret, consider separating the scripts into mod and no-mod scripts and have them work together using link messages.
-Alternative to the above, you may consider obfuscation (see below for more).
Tips for obfuscation:
-Use low-level operators, especially bitwise, whenever possible. If your code contains:
CODE
[integer]*=8;
Consider using this instead:
CODE
[integer] = [integer]<<3;
-Use redundant and strangely-named variables and functions.
-Use hexadecimal integers instead of decimal ones (remember that they start with "0x"

I'm interested to hear tips from other people.