This pics are a little small to scrutinize all that well, but I see what you mean in most of them. The "flashing" doesn't look like an alpha sorting issue, which was my first thought. It looks like Z-fighting, or what SL residents tend to call "flicker".
Just in case anyone reading this doesn't know what we're talking about, Z-fighting is caused two or more parallel surfaces are so close together in space that the camera-Z distance (depth) between them becomes less than the equivalent of one pixel on your screen. The renderer doesn't know how to draw two surfaces in the same space at the same time, so it does the best it can to choose which parts of each get drawn in each frame. The result is the appearance of "flickering" between the two from frame to frame.
Typically in SL, a difference of just .002 meters is enough to prevent Z-fighting up to a considerable viewing distance. Your cross section pic (number 00

seems to show a depth of way more than that. So yeah, something appears to be wrong.
Just to be sure it's not an issue with the new viewer, try installing the old one, and see if things improve. If it gets better, then you know it's not your video card or its drivers that are the problem. Stick with the older viewer for the time being, and then maybe try the next version whenever it comes out.
If viewer version makes no difference, then my next guess would be drivers. Try replacing whatever driver you've got now with something out of the 175 series, if it's available for your card. 175.19 is what I'm currently using, by the way.
If that doesn't work, try the newest driver available. And if that doesn't work, maybe there's an issue between SL and the particular card you've got. Which card is it?
You might also want to try playing with the camera focal length settings. Ctrl-0 makes the camera more orthographic, shortening the depth field. Z-fighting will be more prevelent if you've pressed ctrl-0 at all, and will get worse the more you press it. Ctrl-8 will make the camera more fisheyed, lengthening the depth field. Z-fighting will become less and less prevalent the more you press ctrl-8. Ctrl-9 returns the focal length to the normal default setting.